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CRYSTAL STRUCTURE OF An antitoxin part of a putative toxin/antitoxin system (SWOL_0700) FROM SYNTROPHOMONAS WOLFEI SUBSP. WOLFEI AT 1.80 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 277 0.2000M MgCl2, 20.0000% PEG-3350, No Buffer pH 5.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.07 40.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.974 α = 107 b = 56.943 β = 103.03 c = 62.561 γ = 100.21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-06-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97905,0.97860 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.828 97 0.048 0.048 10.8 2 46885 24.57
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 95.9 0.344 0.344 2.2 2 3459
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.828 46885 2379 97.05 0.195 0.193 0.2098 0.249 0.262 RANDOM 19.112
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -1.45 0.35 -0.45 -0.82 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.441 r_dihedral_angle_4_deg 19.699 r_dihedral_angle_3_deg 15.085 r_dihedral_angle_1_deg 6.459 r_scangle_it 3.901 r_scbond_it 2.452 r_mcangle_it 1.627 r_angle_refined_deg 1.545 r_angle_other_deg 0.937 r_mcbond_it 0.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.441 r_dihedral_angle_4_deg 19.699 r_dihedral_angle_3_deg 15.085 r_dihedral_angle_1_deg 6.459 r_scangle_it 3.901 r_scbond_it 2.452 r_mcangle_it 1.627 r_angle_refined_deg 1.545 r_angle_other_deg 0.937 r_mcbond_it 0.925 r_mcbond_other 0.255 r_chiral_restr 0.098 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4509 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing