CRYSTAL STRUCTURE OF An antitoxin part of a putative toxin/antitoxin system (SWOL_0700) FROM SYNTROPHOMONAS WOLFEI SUBSP. WOLFEI AT 1.80 A RESOLUTION
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | PHD_like | e3k6qD1 | A: a+b duplicates or obligate multimers | X: TTHA1013/TTHA0281-like (From Topology) | H: TTHA1013/TTHA0281-like (From Topology) | T: TTHA1013/TTHA0281-like | F: PHD_like | ECOD (1.6) |
| D | PhdYeFM_antitox_1 | e3k6qD2 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox_1 | ECOD (1.6) |
| C | PHD_like | e3k6qC1 | A: a+b duplicates or obligate multimers | X: TTHA1013/TTHA0281-like (From Topology) | H: TTHA1013/TTHA0281-like (From Topology) | T: TTHA1013/TTHA0281-like | F: PHD_like | ECOD (1.6) |
| C | PhdYeFM_antitox_1 | e3k6qC2 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox_1 | ECOD (1.6) |
| B | PHD_like | e3k6qB1 | A: a+b duplicates or obligate multimers | X: TTHA1013/TTHA0281-like (From Topology) | H: TTHA1013/TTHA0281-like (From Topology) | T: TTHA1013/TTHA0281-like | F: PHD_like | ECOD (1.6) |
| B | PhdYeFM_antitox_1 | e3k6qB2 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox_1 | ECOD (1.6) |
| A | PHD_like | e3k6qA1 | A: a+b duplicates or obligate multimers | X: TTHA1013/TTHA0281-like (From Topology) | H: TTHA1013/TTHA0281-like (From Topology) | T: TTHA1013/TTHA0281-like | F: PHD_like | ECOD (1.6) |
| A | PhdYeFM_antitox_1 | e3k6qA2 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 3.40.1620.10 | Alpha Beta | 3-Layer(aba) Sandwich | YefM-like fold | YefM-like domain | CATH (4.3.0) |
| D | 3.30.160.620 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
| C | 3.40.1620.10 | Alpha Beta | 3-Layer(aba) Sandwich | YefM-like fold | YefM-like domain | CATH (4.3.0) |
| C | 3.30.160.620 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
| B | 3.40.1620.10 | Alpha Beta | 3-Layer(aba) Sandwich | YefM-like fold | YefM-like domain | CATH (4.3.0) |
| B | 3.30.160.620 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
| A | 3.40.1620.10 | Alpha Beta | 3-Layer(aba) Sandwich | YefM-like fold | YefM-like domain | CATH (4.3.0) |
| A | 3.30.160.620 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF12910 | Antitoxin of toxin-antitoxin, RelE / RelB, TA system (PHD_like) | Antitoxin of toxin-antitoxin, RelE / RelB, TA system | This domain appears to be the N-terminus of the RelB antitoxin of toxin-antitoxin stability system or prevent-host death system. Together RelE toxin and the RelB antitoxin form a non-toxic complex. Although toxin-antitoxin gene cassettes were first ... | Domain |
