X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2EERPDB ENTRY 2EER, 1JVB, 2H6E, 1RJW, 2HCY
experimental modelPDB 1JVBPDB ENTRY 2EER, 1JVB, 2H6E, 1RJW, 2HCY
experimental modelPDB 2H6EPDB ENTRY 2EER, 1JVB, 2H6E, 1RJW, 2HCY
experimental modelPDB 1RJWPDB ENTRY 2EER, 1JVB, 2H6E, 1RJW, 2HCY
experimental modelPDB 2HCYPDB ENTRY 2EER, 1JVB, 2H6E, 1RJW, 2HCY

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.52980.1M AMMONIUM ACETATE, 0.1M BIS-TRIS, 17% PEG-10000, pH5.5, batch crystallization, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.754.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.822α = 90
b = 106.119β = 91.26
c = 109.097γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2009-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.08150SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
124098.40.07511.873.79952499524-331.821
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.1798.90.3343.63.721640

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2EER, 1JVB, 2H6E, 1RJW, 2HCY238.4531.349949399493498598.40.1620.1590.206RANDOM29.825
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.482-0.3862.7860.695
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d14.563
f_angle_d1.095
f_chiral_restr0.065
f_bond_d0.016
f_plane_restr0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9892
Nucleic Acid Atoms
Solvent Atoms1184
Heterogen Atoms232

Software

Software
Software NamePurpose
XSCALEdata processing
PHENIXrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection
XDSdata reduction
XDSdata scaling
BALBESphasing