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cryo-EM reconstruction of West Nile virus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HG0
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details vitrification carried out in a BSL3 lab
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 1556 Reported Resolution (Å) 10.3 Resolution Method FSC 0.5 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (2HG0) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Cross-correlation coefficient Overall B Value Fitting Procedure Details REFINEMENT PROTOCOL--Rigid Body
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 30
Imaging Experiment 1 Date of Experiment 2004-10-21 Temperature (Kelvin) Microscope Model FEI/PHILIPS CM300FEG/T Minimum Defocus (nm) 112 Maximum Defocus (nm) 321 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN LIQUID NITROGEN Nominal Magnification Calibrated Magnification 47440 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING EMfit RECONSTRUCTION Auto3DEM
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details each particle