3HOL

The Structure of Intact Ap-TbpB (N and C lobes)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP829820% PEG3350, 0.1M Tris pH 8.0, 150 mM NaCl, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.244.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.36α = 90
b = 96.807β = 90
c = 143.298γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDWhite beam slits, cryo-cooled first and sagittally bent second crystal of doubl e crystal monochromator (DCM), vertically focusing mirror (VFM)2008-08-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.97625CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9833.698.60.09224.36.735130333112217.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.982.0586.70.3314.95.33016

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3HOE1.9833.623513033311175999.40.187440.187440.185170.23142RANDOM21.054
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.150.07-0.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.637
r_dihedral_angle_4_deg18.421
r_dihedral_angle_3_deg14.845
r_dihedral_angle_1_deg6.58
r_scangle_it4.146
r_scbond_it2.572
r_mcangle_it1.723
r_angle_refined_deg1.462
r_mcbond_it0.956
r_chiral_restr0.106
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.637
r_dihedral_angle_4_deg18.421
r_dihedral_angle_3_deg14.845
r_dihedral_angle_1_deg6.58
r_scangle_it4.146
r_scbond_it2.572
r_mcangle_it1.723
r_angle_refined_deg1.462
r_mcbond_it0.956
r_chiral_restr0.106
r_bond_refined_d0.016
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3895
Nucleic Acid Atoms
Solvent Atoms437
Heterogen Atoms

Software

Software
Software NamePurpose
Macromoleculardata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling