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CRYSTAL STRUCTURE OF A PUTATIVE SNOAL-LIKE POLYKETIDE CYCLASE [CARBOHYDRATE PHOSPHATASE] (MLR7391) FROM MESORHIZOBIUM LOTI AT 1.96 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.6 293 0.3000 M magnesium chloride, 24.0000% polyethylene glycol 8000, 0.1M TRIS pH 8.6, VAPOR DIFFUSION, SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.24 45.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.183 α = 88.77 b = 54.778 β = 84.91 c = 63.844 γ = 73.56
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-02-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97894,0.97833 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 28.352 89.1 0.045 9.82 2.02 37927 -3 26.47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.03 86 0.201 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.96 28.352 37925 1903 96.7 0.179 0.177 0.1849 0.22 0.2219 RANDOM 35.285
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.45 0.8 1.1 -0.9 -0.1 -1.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.436 r_dihedral_angle_4_deg 15.841 r_dihedral_angle_3_deg 11.851 r_scangle_it 8.225 r_scbond_it 6.234 r_dihedral_angle_1_deg 3.734 r_mcangle_it 3.232 r_mcbond_it 2.469 r_angle_refined_deg 1.659 r_angle_other_deg 0.946
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.436 r_dihedral_angle_4_deg 15.841 r_dihedral_angle_3_deg 11.851 r_scangle_it 8.225 r_scbond_it 6.234 r_dihedral_angle_1_deg 3.734 r_mcangle_it 3.232 r_mcbond_it 2.469 r_angle_refined_deg 1.659 r_angle_other_deg 0.946 r_mcbond_other 0.571 r_xyhbond_nbd_refined 0.216 r_symmetry_vdw_other 0.204 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.196 r_nbtor_refined 0.188 r_nbd_other 0.177 r_xyhbond_nbd_other 0.138 r_symmetry_vdw_refined 0.113 r_nbtor_other 0.09 r_chiral_restr 0.081 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3651 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing