Experiment: 3HFD

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	8	293	0.1 M NaCl, 0.1 M Tris, 32% PEG 3350, pH 8.0, vapor diffusion, temperature 293K

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 76.895	α = 90
b = 38.259	β = 100.41
c = 80.477	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	MAR scanner 345 mm plate		2008-05-22		SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL11-1	1.0	SSRL	BL11-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.8	79.06	95.6	0.068	16.551	3.4		5581

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.8	2.9	77.2		0.214		2.7	439

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.8	30	5580	255	95.34	0.23	0.225	0.328	RANDOM	23.885

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.51		-1.93	3.3		-2.49

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.332
r_dihedral_angle_3_deg	18.118
r_dihedral_angle_4_deg	15.941
r_dihedral_angle_1_deg	7.376
r_scangle_it	1.502
r_angle_refined_deg	1.182
r_scbond_it	0.853
r_angle_other_deg	0.819
r_mcangle_it	0.659
r_mcbond_it	0.339

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.332
r_dihedral_angle_3_deg	18.118
r_dihedral_angle_4_deg	15.941
r_dihedral_angle_1_deg	7.376
r_scangle_it	1.502
r_angle_refined_deg	1.182
r_scbond_it	0.853
r_angle_other_deg	0.819
r_mcangle_it	0.659
r_mcbond_it	0.339
r_chiral_restr	0.065
r_mcbond_other	0.042
r_bond_refined_d	0.01
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1780
Nucleic Acid Atoms
Solvent Atoms	13
Heterogen Atoms

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
BALBES	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.