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BHA10 IgG1 Fab quadruple mutant variant - antibody directed at human LTBR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HC0 PDB entry 3HC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 20% PEG 4000, 200 mM calcium acetate 10 mM zinc chloride and 100 mM Tris at pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.97 58.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.605 α = 90 b = 118.233 β = 90 c = 126.452 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 1.000 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 50 99.5 0.089 66764 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.62 1.66 93.4 0.479
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3HC0 1.62 20 2 2 66764 3546 99.45 0.16202 0.16102 0.185 0.18048 0.2015 RANDOM 16.133
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.57 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.99 r_dihedral_angle_4_deg 19.782 r_dihedral_angle_3_deg 12.813 r_dihedral_angle_1_deg 6.534 r_sphericity_free 5.591 r_scangle_it 2.737 r_scbond_it 1.973 r_sphericity_bonded 1.491 r_mcangle_it 1.361 r_angle_refined_deg 1.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.99 r_dihedral_angle_4_deg 19.782 r_dihedral_angle_3_deg 12.813 r_dihedral_angle_1_deg 6.534 r_sphericity_free 5.591 r_scangle_it 2.737 r_scbond_it 1.973 r_sphericity_bonded 1.491 r_mcangle_it 1.361 r_angle_refined_deg 1.311 r_mcbond_it 0.942 r_rigid_bond_restr 0.932 r_angle_other_deg 0.813 r_mcbond_other 0.278 r_symmetry_vdw_other 0.227 r_symmetry_vdw_refined 0.211 r_nbd_refined 0.205 r_nbd_other 0.198 r_nbtor_refined 0.174 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.119 r_nbtor_other 0.084 r_chiral_restr 0.081 r_metal_ion_refined 0.059 r_symmetry_metal_ion_refined 0.031 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3440 Nucleic Acid Atoms Solvent Atoms 385 Heterogen Atoms 14
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling