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Lovastatin polyketide enoyl reductase (LovC) mutant K54S with bound NADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B70 PDB Entry 3B70
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 30% PEG 4000, 0.1 M sodium acetate, 0.2 M ammonium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.12 42.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.542 α = 90 b = 44.495 β = 101.96 c = 93.001 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2008-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.9761 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 50 97.5 0.084 15.1 3.5 34298 33414
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.8 87.2 0.334 2.8 3 2674
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 3B70 1.74 35.19 32577 1716 97.05 0.17408 0.17167 0.1704 0.21959 0.2181 RANDOM 24.833
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.75 1.25 -0.13 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.233 r_dihedral_angle_4_deg 18.124 r_dihedral_angle_3_deg 14.515 r_dihedral_angle_1_deg 5.44 r_sphericity_free 5.163 r_rigid_bond_restr 3.979 r_scangle_it 3.887 r_scbond_it 3.859 r_sphericity_bonded 3.392 r_mcangle_it 1.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.233 r_dihedral_angle_4_deg 18.124 r_dihedral_angle_3_deg 14.515 r_dihedral_angle_1_deg 5.44 r_sphericity_free 5.163 r_rigid_bond_restr 3.979 r_scangle_it 3.887 r_scbond_it 3.859 r_sphericity_bonded 3.392 r_mcangle_it 1.833 r_angle_refined_deg 1.415 r_mcbond_it 1.217 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.206 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.133 r_symmetry_hbond_refined 0.107 r_chiral_restr 0.096 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2696 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement CNS refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing