☰ Navigation Tabs
Crystal structure of N-ethylmaleimidine reductase from Burkholderia pseudomallei
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R14
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 JCSG+ sparse matrix screen condition H3, 25% PEG3350, 0.1M BisTris pH 5.5, 12.2 mg/mL BupsA00093aB1, crystal ID 200758h3, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.1 41.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.35 α = 90 b = 77.89 β = 90 c = 168.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2009-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.6 0.134 11.82 29741
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.35 99.9 0.443 3.97 2179
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2R14 2.3 50 29688 1506 99.66 0.18 0.176 0.1774 0.239 0.2324 RANDOM 14.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 0.93 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.895 r_dihedral_angle_4_deg 13.467 r_dihedral_angle_3_deg 13.376 r_dihedral_angle_1_deg 5.691 r_scangle_it 2.07 r_scbond_it 1.207 r_angle_refined_deg 1.068 r_angle_other_deg 0.853 r_mcangle_it 0.74 r_mcbond_it 0.382
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.895 r_dihedral_angle_4_deg 13.467 r_dihedral_angle_3_deg 13.376 r_dihedral_angle_1_deg 5.691 r_scangle_it 2.07 r_scbond_it 1.207 r_angle_refined_deg 1.068 r_angle_other_deg 0.853 r_mcangle_it 0.74 r_mcbond_it 0.382 r_mcbond_other 0.063 r_chiral_restr 0.062 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5276 Nucleic Acid Atoms Solvent Atoms 397 Heterogen Atoms 62
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction