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Crystal structure of laminaripentaose-producing beta-1,3-glucanase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIQUID DIFFUSION 6.5 293 0.15M ammonium sulfate, 30% PEG MME5000, 0.1M MES (pH6.5), LIQUID DIFFUSION, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.164 α = 90 b = 60.683 β = 90 c = 149.395 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 210 2006-06-08 M SINGLE WAVELENGTH 2 2 x-ray 77 CCD ADSC QUANTUM 4 2006-06-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13C1 0.9762 NSRRC BL13C1 2 SYNCHROTRON SPRING-8 BEAMLINE BL12B2 0.9794, 0.9796, 0.9642 SPring-8 BL12B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.62 29.7 100 0.06 0.047 43.9 14 54287 54285 28.5 16.8 17.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.62 1.68 100 0.336 0.3 8.4 12.3 5354
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.62 29.7 51526 2760 99.97 0.18135 0.1794 0.1782 0.21768 0.2165 RANDOM 17.074
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.51 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.647 r_dihedral_angle_4_deg 16.686 r_dihedral_angle_3_deg 12.943 r_dihedral_angle_1_deg 6.063 r_scangle_it 2.308 r_mcangle_it 1.864 r_scbond_it 1.516 r_angle_refined_deg 1.323 r_mcbond_it 1.079 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.647 r_dihedral_angle_4_deg 16.686 r_dihedral_angle_3_deg 12.943 r_dihedral_angle_1_deg 6.063 r_scangle_it 2.308 r_mcangle_it 1.864 r_scbond_it 1.516 r_angle_refined_deg 1.323 r_mcbond_it 1.079 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2757 Nucleic Acid Atoms Solvent Atoms 730 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing