X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP829823% PEG3350, 0.12M Li2SO4, 3.9% SORBITOL, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.7555.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.317α = 90
b = 106.166β = 90
c = 121.486γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR2008-04-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X4C0.979NSLSX4C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
123099.20.06321.641573059
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0799.50.3434.87221

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT23072986367899.170.1840.1820.216RANDOM32.57
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.560.97-1.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.596
r_dihedral_angle_4_deg16.802
r_dihedral_angle_3_deg14.187
r_dihedral_angle_1_deg4.994
r_scangle_it2.581
r_scbond_it1.532
r_angle_refined_deg1.184
r_mcangle_it0.997
r_mcbond_it0.581
r_symmetry_hbond_refined0.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.596
r_dihedral_angle_4_deg16.802
r_dihedral_angle_3_deg14.187
r_dihedral_angle_1_deg4.994
r_scangle_it2.581
r_scbond_it1.532
r_angle_refined_deg1.184
r_mcangle_it0.997
r_mcbond_it0.581
r_symmetry_hbond_refined0.47
r_nbtor_refined0.298
r_nbd_refined0.184
r_symmetry_vdw_refined0.183
r_xyhbond_nbd_refined0.147
r_chiral_restr0.077
r_metal_ion_refined0.024
r_bond_refined_d0.009
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6842
Nucleic Acid Atoms
Solvent Atoms856
Heterogen Atoms96

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction