Experiment: 3G5W

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	7.5	277	40% MPD, 4% Glycerol, pH 7.5, vapor diffusion, temperature 277K

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 76.14	α = 81.48
b = 76.254	β = 73.38
c = 105.145	γ = 61.84

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 300 mm CCD		2008-10-10	M	SINGLE WAVELENGTH
2	2	x-ray	100	CCD	MARMOSAIC 300 mm CCD		2008-10-10	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 21-ID-D	0.91933	APS	21-ID-D
2	SYNCHROTRON	APS BEAMLINE 23-ID-D	1.3811, 1.3189, 1.3476	APS	23-ID-D

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2	1.9	100.5		0.083	0.083	16.9	24.3		153165			23.92

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1,2	1.9	1.97	98.2		0.342	0.342	4.8	2.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		THROUGHOUT	1.9	48.28	153165	7696	97.74	0.168	0.166	0.197	RANDOM	23.915

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.48	0.78	-0.38	-0.49	0.11	0.42

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.39
r_dihedral_angle_4_deg	21.423
r_dihedral_angle_3_deg	14.538
r_dihedral_angle_1_deg	6.188
r_scangle_it	2.206
r_scbond_it	1.39
r_angle_refined_deg	1.146
r_mcangle_it	0.84
r_mcbond_it	0.525
r_nbtor_refined	0.308

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.39
r_dihedral_angle_4_deg	21.423
r_dihedral_angle_3_deg	14.538
r_dihedral_angle_1_deg	6.188
r_scangle_it	2.206
r_scbond_it	1.39
r_angle_refined_deg	1.146
r_mcangle_it	0.84
r_mcbond_it	0.525
r_nbtor_refined	0.308
r_nbd_refined	0.183
r_symmetry_vdw_refined	0.136
r_xyhbond_nbd_refined	0.097
r_symmetry_hbond_refined	0.097
r_chiral_restr	0.084
r_metal_ion_refined	0.058
r_bond_refined_d	0.008
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	15282
Nucleic Acid Atoms
Solvent Atoms	1278
Heterogen Atoms	60

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.