3FPX

Native fungus laccase from Trametes hirsuta


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1HANGING DROP729910% PEG 1000, 0.02M potassium phosphate buffer, pH7.0, HANGING DROP, temperature 299.0K
Crystal Properties
Matthews coefficientSolvent content
2.4149.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.293α = 90
b = 76.345β = 90
c = 129.661γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR2002-11-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7A1.38EMBL/DESY, HAMBURGBW7A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.865.994.70.07419.84.6463821131.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.841.8681.30.582.74.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1GYC1.865.946096233094.550.1820.180.233RANDOM31.277
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.712.65-0.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.337
r_dihedral_angle_4_deg17.551
r_dihedral_angle_3_deg12.409
r_dihedral_angle_1_deg7.003
r_scangle_it3.328
r_scbond_it2.416
r_angle_refined_deg1.826
r_mcangle_it1.604
r_mcbond_it1.059
r_angle_other_deg0.999
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.337
r_dihedral_angle_4_deg17.551
r_dihedral_angle_3_deg12.409
r_dihedral_angle_1_deg7.003
r_scangle_it3.328
r_scbond_it2.416
r_angle_refined_deg1.826
r_mcangle_it1.604
r_mcbond_it1.059
r_angle_other_deg0.999
r_mcbond_other0.321
r_symmetry_vdw_other0.248
r_nbtor_refined0.227
r_nbd_other0.216
r_nbd_refined0.214
r_metal_ion_refined0.186
r_symmetry_hbond_refined0.169
r_symmetry_vdw_refined0.168
r_xyhbond_nbd_refined0.149
r_nbtor_other0.109
r_chiral_restr0.107
r_bond_refined_d0.02
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3795
Nucleic Acid Atoms
Solvent Atoms275
Heterogen Atoms173

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling