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Structure of the Yeats Domain, Yaf9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 291 10% PEG 3350, 100 mM Na, Tartrate, 20% glycerol, pH 7.5, microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.62 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.725 α = 90 b = 84.725 β = 90 c = 288.212 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 210 2004-06-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587, 0.9795, 1.0199 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 95.8 0.063 6.3 24936 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 92.8 0.368 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 20 24936 1323 93.03 0.22394 0.22217 0.227 0.25746 0.2588 RANDOM 32.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.87 -0.93 -1.87 2.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.368 r_dihedral_angle_4_deg 15.738 r_dihedral_angle_3_deg 14.944 r_dihedral_angle_1_deg 6 r_angle_refined_deg 0.989 r_symmetry_vdw_refined 0.946 r_scangle_it 0.799 r_mcangle_it 0.551 r_scbond_it 0.521 r_mcbond_it 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.368 r_dihedral_angle_4_deg 15.738 r_dihedral_angle_3_deg 14.944 r_dihedral_angle_1_deg 6 r_angle_refined_deg 0.989 r_symmetry_vdw_refined 0.946 r_scangle_it 0.799 r_mcangle_it 0.551 r_scbond_it 0.521 r_mcbond_it 0.33 r_nbtor_refined 0.304 r_nbd_refined 0.184 r_xyhbond_nbd_refined 0.105 r_symmetry_hbond_refined 0.077 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3471 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling