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Crystal Structure Analysis of the Middle Domain of the Caf1A Usher
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 283 10% PEG 8000, 0.2 M MgCl2, 0.1 M Tris-HCl, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 2.47 50.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.985 α = 90 b = 111.966 β = 90 c = 115.141 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker XFlash 2007-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 100 0.065 0.065 20.6 4.9 5685 74.91
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.85 100 0.573 0.573 2.2 5.1 792
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.85 20 2 4613 221 100 0.26544 0.2644 0.2608 0.28694 0.2809 RANDOM 53.988
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 -2.9 2.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.3 r_dihedral_angle_4_deg 19.098 r_dihedral_angle_3_deg 14.217 r_dihedral_angle_1_deg 5.007 r_angle_refined_deg 0.847 r_scangle_it 0.515 r_scbond_it 0.355 r_mcangle_it 0.316 r_nbtor_refined 0.305 r_mcbond_it 0.202
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.3 r_dihedral_angle_4_deg 19.098 r_dihedral_angle_3_deg 14.217 r_dihedral_angle_1_deg 5.007 r_angle_refined_deg 0.847 r_scangle_it 0.515 r_scbond_it 0.355 r_mcangle_it 0.316 r_nbtor_refined 0.305 r_mcbond_it 0.202 r_symmetry_vdw_refined 0.154 r_nbd_refined 0.147 r_xyhbond_nbd_refined 0.079 r_symmetry_hbond_refined 0.056 r_chiral_restr 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1123 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 1
Software Software Software Name Purpose DNA data collection SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling