3E9V

Crystal structure of human B-cell Translocation Gene 2 (BTG2)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5294100mM Bis-Tris pH 6.5, 0.2M Magnesium Chloride, 25% PEG 3350, Vapor diffusion, sitting drop, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
1.8433.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.535α = 90
b = 41.023β = 90
c = 68.652γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2008-07-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.9792APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.741.0398.70.0710.0716.6913.81264625.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7997.60.4570.4571.513.41785

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2D5R1.735.221261363298.410.2130.2110.248RANDOM24.514
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.243
r_dihedral_angle_4_deg17.658
r_dihedral_angle_3_deg10.931
r_dihedral_angle_1_deg5.21
r_scangle_it3.161
r_scbond_it2.369
r_mcangle_it1.501
r_angle_refined_deg1.431
r_mcbond_it1.15
r_angle_other_deg0.868
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.243
r_dihedral_angle_4_deg17.658
r_dihedral_angle_3_deg10.931
r_dihedral_angle_1_deg5.21
r_scangle_it3.161
r_scbond_it2.369
r_mcangle_it1.501
r_angle_refined_deg1.431
r_mcbond_it1.15
r_angle_other_deg0.868
r_mcbond_other0.271
r_symmetry_vdw_other0.241
r_nbd_refined0.232
r_nbd_other0.189
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.148
r_symmetry_vdw_refined0.121
r_symmetry_hbond_refined0.094
r_nbtor_other0.084
r_chiral_restr0.08
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms945
Nucleic Acid Atoms
Solvent Atoms66
Heterogen Atoms8

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing