☰ Navigation Tabs
The 1.5 A crystal structure of endo-1,3-beta-glucanase from Streptomyces sioyaensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microseeding method 7.5 278 25% PEG MME 2000, 100mM Hepes pH 7.5, 10mM MgCl2, 0.01% NaN3, microseeding method, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.03 39.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.509 α = 90 b = 75.967 β = 90 c = 79.663 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20 99 0.048 34.8 4.2 38840 -3 10.246
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.57 96.3 0.098 14.4 3.39 4632
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 19.75 36838 1949 99.03 0.18361 0.18284 0.1926 0.19832 0.2098 RANDOM 13.559
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.268 r_dihedral_angle_4_deg 15.983 r_dihedral_angle_3_deg 10.491 r_dihedral_angle_1_deg 6.882 r_scangle_it 1.642 r_scbond_it 1.249 r_angle_refined_deg 1.244 r_mcangle_it 0.811 r_mcbond_it 0.476 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.268 r_dihedral_angle_4_deg 15.983 r_dihedral_angle_3_deg 10.491 r_dihedral_angle_1_deg 6.882 r_scangle_it 1.642 r_scbond_it 1.249 r_angle_refined_deg 1.244 r_mcangle_it 0.811 r_mcbond_it 0.476 r_nbtor_refined 0.305 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.163 r_chiral_restr 0.082 r_xyhbond_nbd_refined 0.08 r_symmetry_hbond_refined 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2053 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection DENZO data reduction SCALEPACK data scaling SHELXCD phasing SHELXE model building