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Crystal Structure of Human serum albumin complexed with Myristic acid and lysophosphatidylethanolamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N5U PDB ENTRY 1N5U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 35% PEG 3350, 85mM potassium phosphate, 5mM sodium azide, pH7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.5 50.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.888 α = 90 b = 39.015 β = 104.69 c = 95.633 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 2000 2007-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 79.1 0.057 2 15244
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.873 85.7 0.356 1.9 1095
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1N5U 2.8 50 15244 813 95.67 0.2234 0.21949 0.2408 0.29527 0.3105 RANDOM 56.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.64 0.58 2.15 -3.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.725 r_dihedral_angle_3_deg 20.429 r_dihedral_angle_4_deg 16.119 r_dihedral_angle_1_deg 6.392 r_scangle_it 2.174 r_angle_refined_deg 1.521 r_scbond_it 1.4 r_angle_other_deg 1.049 r_mcangle_it 0.823 r_mcbond_it 0.524
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.725 r_dihedral_angle_3_deg 20.429 r_dihedral_angle_4_deg 16.119 r_dihedral_angle_1_deg 6.392 r_scangle_it 2.174 r_angle_refined_deg 1.521 r_scbond_it 1.4 r_angle_other_deg 1.049 r_mcangle_it 0.823 r_mcbond_it 0.524 r_symmetry_vdw_other 0.3 r_nbd_refined 0.241 r_nbd_other 0.201 r_nbtor_refined 0.193 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.131 r_symmetry_vdw_refined 0.122 r_nbtor_other 0.092 r_mcbond_other 0.091 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4493 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing