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Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 293 20-25% PEG1500, 0.1 M MIB buffer, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.36 α = 90 b = 88.84 β = 90 c = 86.59 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARMOSAIC 225 mm CCD Dynamically bendable mirror 2007-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97925 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 40 95.8 0.087 13 4.4 17459 17459 58.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 90.2 0.338 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.7 39.53 17285 17285 886 99.75 0.21511 0.21511 0.21247 0.2216 0.26585 0.278 RANDOM 43.107
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 -3.46 3.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.164 r_dihedral_angle_3_deg 15.46 r_dihedral_angle_4_deg 11.373 r_dihedral_angle_1_deg 5.808 r_scangle_it 1.12 r_angle_refined_deg 1.112 r_angle_other_deg 0.776 r_scbond_it 0.619 r_mcangle_it 0.514 r_mcbond_it 0.476
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.164 r_dihedral_angle_3_deg 15.46 r_dihedral_angle_4_deg 11.373 r_dihedral_angle_1_deg 5.808 r_scangle_it 1.12 r_angle_refined_deg 1.112 r_angle_other_deg 0.776 r_scbond_it 0.619 r_mcangle_it 0.514 r_mcbond_it 0.476 r_symmetry_vdw_other 0.237 r_symmetry_hbond_refined 0.194 r_nbd_refined 0.19 r_nbtor_refined 0.186 r_nbd_other 0.17 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.138 r_nbtor_other 0.079 r_chiral_restr 0.059 r_mcbond_other 0.042 r_bond_refined_d 0.007 r_bond_other_d 0.001 r_gen_planes_refined r_gen_planes_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4110 Nucleic Acid Atoms 609 Solvent Atoms 9 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling CNS phasing