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Photoswitchable red fluorescent protein psRFP, on-state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CFA PDB ENTRY 3CFA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 298 0.2M di-Sodium tartate, 40%(w/v) MPD, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.83 56.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.418 α = 90 b = 98.36 β = 90 c = 242.626 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirror 2007-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 97 0.073 4.5 105610 102342 2 30.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.83 95.6 0.58 2.3 4.2 5233
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CFA 1.8 12.27 105610 100059 5260 97.05 0.19753 0.19611 0.1976 0.22401 0.2268 RANDOM 35.822
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 1.47 -2.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.077 r_dihedral_angle_4_deg 16.396 r_dihedral_angle_3_deg 14.374 r_dihedral_angle_1_deg 6.038 r_scangle_it 1.673 r_angle_refined_deg 1.095 r_scbond_it 1.078 r_mcangle_it 0.892 r_mcbond_it 0.527 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.077 r_dihedral_angle_4_deg 16.396 r_dihedral_angle_3_deg 14.374 r_dihedral_angle_1_deg 6.038 r_scangle_it 1.673 r_angle_refined_deg 1.095 r_scbond_it 1.078 r_mcangle_it 0.892 r_mcbond_it 0.527 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.198 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.164 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.07 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7524 Nucleic Acid Atoms Solvent Atoms 917 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection DENZO data reduction SCALEPACK data scaling MOLREP phasing