3CFF

Photoswitchable red fluorescent protein psRFP, on-state


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.22980.2M di-Sodium tartate, 40%(w/v) MPD, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.8356.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.418α = 90
b = 98.36β = 90
c = 242.626γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mmmirror2007-11-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW61.05MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.820970.0734.5105610102342230.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.8395.60.582.34.25233

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3CFA1.812.27105610100059526097.050.197530.196110.22401RANDOM35.822
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.151.47-2.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.077
r_dihedral_angle_4_deg16.396
r_dihedral_angle_3_deg14.374
r_dihedral_angle_1_deg6.038
r_scangle_it1.673
r_angle_refined_deg1.095
r_scbond_it1.078
r_mcangle_it0.892
r_mcbond_it0.527
r_nbtor_refined0.299
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.077
r_dihedral_angle_4_deg16.396
r_dihedral_angle_3_deg14.374
r_dihedral_angle_1_deg6.038
r_scangle_it1.673
r_angle_refined_deg1.095
r_scbond_it1.078
r_mcangle_it0.892
r_mcbond_it0.527
r_nbtor_refined0.299
r_symmetry_hbond_refined0.198
r_nbd_refined0.195
r_symmetry_vdw_refined0.164
r_xyhbond_nbd_refined0.157
r_chiral_restr0.07
r_bond_refined_d0.006
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7524
Nucleic Acid Atoms
Solvent Atoms917
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MAR345dtbdata collection
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing