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Crystal Structure of HIV Reverse Transcriptase in complex with inhibitor 14
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RF2 PDB entry 2RF2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.1 298 Sodium Citrate, pH 6.1, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.05 59.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.292 α = 90 b = 154.506 β = 90 c = 155.703 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 93.4 0.103 14.2 5.2 39565 36954
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 93.7 0.785 1.7 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 2RF2 2.7 47.22 35066 1857 93.33 0.20593 0.20196 0.28128 0.2579 RANDOM 48.378
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -1.04 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.597 r_dihedral_angle_4_deg 25.162 r_dihedral_angle_3_deg 23.443 r_dihedral_angle_1_deg 7.197 r_scangle_it 4.363 r_scbond_it 2.931 r_angle_refined_deg 1.89 r_mcangle_it 1.878 r_mcbond_it 1.395 r_nbtor_refined 0.329
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.597 r_dihedral_angle_4_deg 25.162 r_dihedral_angle_3_deg 23.443 r_dihedral_angle_1_deg 7.197 r_scangle_it 4.363 r_scbond_it 2.931 r_angle_refined_deg 1.89 r_mcangle_it 1.878 r_mcbond_it 1.395 r_nbtor_refined 0.329 r_symmetry_vdw_refined 0.285 r_nbd_refined 0.274 r_xyhbond_nbd_refined 0.193 r_chiral_restr 0.129 r_symmetry_hbond_refined 0.127 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7894 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling BUSTER phasing