2RF2

HIV reverse transcriptase in complex with inhibitor 7e (NNRTI)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Novel indole-3-sulfonamides as potent HIV non-nucleoside reverse transcriptase inhibitors (NNRTIs).

Zhao, Z.Wolkenberg, S.E.Lu, M.Munshi, V.Moyer, G.Feng, M.Carella, A.V.Ecto, L.T.Gabryelski, L.J.Lai, M.T.Prasad, S.G.Yan, Y.McGaughey, G.B.Miller, M.D.Lindsley, C.W.Hartman, G.D.Vacca, J.P.Williams, T.M.

(2008) Bioorg.Med.Chem.Lett. 18: 554-559

  • DOI: 10.1016/j.bmcl.2007.11.085

  • PubMed Abstract: 
  • This Letter describes the design, synthesis, and biological evaluation of novel 3-indole sulfonamides as potent non-nucleoside reverse transcriptase inhibitors (NNRTIs) with balanced profiles against common HIV RT mutants K103N and Y181C.

    This Letter describes the design, synthesis, and biological evaluation of novel 3-indole sulfonamides as potent non-nucleoside reverse transcriptase inhibitors (NNRTIs) with balanced profiles against common HIV RT mutants K103N and Y181C.


    Organizational Affiliation

    Department of Medicinal Chemistry, Merck & Co., Inc., PO Box 4, West Point, PA 19486, USA. zhijian_zhao@merck.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p66 RT)
A
563Human immunodeficiency virus type 1 group M subtype BMutation(s): 0 
Gene Names: gag-pol
Find proteins for P04585 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P04585
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p66 RT)
B
443Human immunodeficiency virus type 1 group M subtype BMutation(s): 0 
Gene Names: gag-pol
Find proteins for P04585 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P04585
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MRX
Query on MRX

Download SDF File 
Download CCD File 
A
5-bromo-3-(pyrrolidin-1-ylsulfonyl)-1H-indole-2-carboxamide
C13 H14 Br N3 O3 S
FEPUPYVRZUWCQB-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
MRXIC50: 3.6 nM BINDINGMOAD
MRXIC50: 3.6 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.185 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 119.290α = 90.00
b = 155.810β = 90.00
c = 155.860γ = 90.00
Software Package:
Software NamePurpose
BUSTER-TNTrefinement
HKL-2000data reduction
MOLREPphasing
HKL-2000data scaling
ADSCdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2007-09-27 
  • Released Date: 2008-01-01 
  • Deposition Author(s): Yan, Y., Prasad, S.

Revision History 

  • Version 1.0: 2008-01-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance