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Crystal structure of cytokinin-specific binding protein in complex with cytokinin and Ta6Br12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.4M SODIUM CITRATE, 0.1M HEPES, pH 7.5,3mM ZEATIN, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.219 α = 90 b = 113.219 β = 90 c = 85.077 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm monochromator 2005-04-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.2547, 1.2580, 1.2703 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 99 0.033 55.1 7.4 57463 56873 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 97.8 0.391 5.5 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 28.31 57463 55374 1160 98.47 0.15897 0.15796 0.20729 0.244 RANDOM 29.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.1 -0.55 -1.1 1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.298 r_dihedral_angle_4_deg 17.868 r_dihedral_angle_3_deg 15.169 r_dihedral_angle_1_deg 5.735 r_scangle_it 4.586 r_scbond_it 2.857 r_mcangle_it 1.86 r_angle_refined_deg 1.76 r_mcbond_it 1.072 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.298 r_dihedral_angle_4_deg 17.868 r_dihedral_angle_3_deg 15.169 r_dihedral_angle_1_deg 5.735 r_scangle_it 4.586 r_scbond_it 2.857 r_mcangle_it 1.86 r_angle_refined_deg 1.76 r_mcbond_it 1.072 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.283 r_nbd_refined 0.244 r_symmetry_hbond_refined 0.202 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.123 r_metal_ion_refined 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4876 Nucleic Acid Atoms Solvent Atoms 578 Heterogen Atoms 203
Software Software Software Name Purpose REFMAC refinement MAR345 data collection DENZO data reduction SCALEPACK data scaling SOLVE phasing