☰ Navigation Tabs
PpcB, A Cytochrome c7 from Geobacter sulfurreducens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 298 45% Jeffamine ED-2001
0.2 M ammonium iodide, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.33 47.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.2 α = 90 b = 47.5 β = 90 c = 88.9 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2003-12-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.73766, 1.73859, 1.78875 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 93 0.089 22.4 3.3 58322
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.35 1.4 62 0.342 2.5 1.6 3851
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.35 19.07 27324 3006 93 0.16411 0.16168 0.1914 0.18575 0.1966 RANDOM 7.746
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.06 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.201 r_sphericity_free 3.117 r_scangle_it 2.706 r_scbond_it 1.968 r_angle_other_deg 1.877 r_sphericity_bonded 1.741 r_angle_refined_deg 1.648 r_mcangle_it 1.491 r_rigid_bond_restr 1.067 r_mcbond_it 0.944
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.201 r_sphericity_free 3.117 r_scangle_it 2.706 r_scbond_it 1.968 r_angle_other_deg 1.877 r_sphericity_bonded 1.741 r_angle_refined_deg 1.648 r_mcangle_it 1.491 r_rigid_bond_restr 1.067 r_mcbond_it 0.944 r_nbd_refined 0.404 r_nbd_other 0.24 r_symmetry_vdw_other 0.235 r_symmetry_hbond_refined 0.221 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.101 r_nbtor_other 0.092 r_gen_planes_other 0.029 r_bond_refined_d 0.016 r_metal_ion_refined 0.016 r_gen_planes_refined 0.015 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1076 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 263
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing