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Crystal Structure of RelB-RelE antitoxin-toxin complex from Methanococcus jannaschii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 20%MPD, 0.1M Bis-Tris pH5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.67 53.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.794 α = 90 b = 57.992 β = 92.3 c = 58.747 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2006-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.94905 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 50 99.6 0.05 15.4 4.2 19952 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.18 98.9 0.421 3.13 4.1 1332
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.2 20 2 17159 931 99.71 0.24007 0.23825 0.2317 0.27418 RANDOM 50.042
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 3.78 -3.96 3.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.571 r_dihedral_angle_3_deg 17.5 r_dihedral_angle_4_deg 14.487 r_dihedral_angle_1_deg 5.217 r_scangle_it 1.403 r_angle_refined_deg 1.058 r_scbond_it 0.961 r_mcangle_it 0.661 r_mcbond_it 0.388 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.571 r_dihedral_angle_3_deg 17.5 r_dihedral_angle_4_deg 14.487 r_dihedral_angle_1_deg 5.217 r_scangle_it 1.403 r_angle_refined_deg 1.058 r_scbond_it 0.961 r_mcangle_it 0.661 r_mcbond_it 0.388 r_nbtor_refined 0.304 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.131 r_symmetry_hbond_refined 0.094 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2118 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction SCALEPACK data scaling SHARP phasing