☰ Navigation Tabs
Crystal structure of a putative carboxylesterase (lp_1002) from lactobacillus plantarum wcfs1 at 2.09 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 NANODROP, 0.8M (NH4)2SO4, 0.1M Bicine pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.03 69.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.62 α = 90 b = 93.62 β = 90 c = 99.57 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-10-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.91840, 0.97939, 0.97953 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 29.285 97 0.084 8.84 29521 -3 34.93
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.16 83.2 0.61 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.09 29.285 29517 1494 97.42 0.176 0.175 0.1808 0.192 0.1988 RANDOM 31.806
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.05 1.02 2.05 -3.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.931 r_dihedral_angle_4_deg 13.156 r_dihedral_angle_3_deg 11.662 r_scangle_it 6.191 r_scbond_it 5.049 r_dihedral_angle_1_deg 4.397 r_mcangle_it 3.177 r_mcbond_it 2.047 r_angle_refined_deg 1.739 r_angle_other_deg 1.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.931 r_dihedral_angle_4_deg 13.156 r_dihedral_angle_3_deg 11.662 r_scangle_it 6.191 r_scbond_it 5.049 r_dihedral_angle_1_deg 4.397 r_mcangle_it 3.177 r_mcbond_it 2.047 r_angle_refined_deg 1.739 r_angle_other_deg 1.095 r_mcbond_other 0.517 r_symmetry_vdw_other 0.289 r_symmetry_vdw_refined 0.211 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.193 r_nbd_other 0.183 r_nbtor_refined 0.182 r_symmetry_hbond_refined 0.159 r_chiral_restr 0.095 r_nbtor_other 0.091 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1863 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction