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Molecular insights into miRNA processing by Arabidopsis Serrate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 PEG4K, Potassium formate, Tris, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.84 56.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.965 α = 90 b = 80.663 β = 90 c = 112.67 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-10-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.2814, 1.2818, 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.9 0.073 7.6 11900 11847 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 99.6 0.476 3.5 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.74 46.19 11900 11847 605 97.76 0.24504 0.24293 0.2387 0.28608 0.2759 RANDOM 77.032
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.83 7.98 -4.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.247 r_dihedral_angle_3_deg 21.776 r_dihedral_angle_4_deg 16.98 r_dihedral_angle_1_deg 5.612 r_scangle_it 2.201 r_angle_refined_deg 1.301 r_scbond_it 1.268 r_mcangle_it 1.01 r_mcbond_it 0.561 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.247 r_dihedral_angle_3_deg 21.776 r_dihedral_angle_4_deg 16.98 r_dihedral_angle_1_deg 5.612 r_scangle_it 2.201 r_angle_refined_deg 1.301 r_scbond_it 1.268 r_mcangle_it 1.01 r_mcbond_it 0.561 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.275 r_nbd_refined 0.236 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2437 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 1
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling