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Crystal Structure of a C-terminal domain of the bacteriophage P2 tail spike protein, gpV
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.912 α = 90 b = 64.463 β = 91.32 c = 67.186 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2010-04-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 99 0.069 7.4 148533
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.27 46.42 140844 7523 99.46 0.16151 0.15996 0.1617 0.19048 0.1917 RANDOM 13.117
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 -0.77 0.22 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.501 r_dihedral_angle_4_deg 15.864 r_dihedral_angle_3_deg 10.67 r_dihedral_angle_1_deg 7.783 r_scangle_it 5.742 r_scbond_it 3.575 r_angle_refined_deg 2.539 r_mcangle_it 2.203 r_mcbond_it 1.349 r_chiral_restr 0.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.501 r_dihedral_angle_4_deg 15.864 r_dihedral_angle_3_deg 10.67 r_dihedral_angle_1_deg 7.783 r_scangle_it 5.742 r_scbond_it 3.575 r_angle_refined_deg 2.539 r_mcangle_it 2.203 r_mcbond_it 1.349 r_chiral_restr 0.199 r_bond_refined_d 0.031 r_gen_planes_refined 0.016 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4985 Nucleic Acid Atoms Solvent Atoms 896 Heterogen Atoms 6
Software Software Software Name Purpose SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling