3AQJ

Crystal Structure of a C-terminal domain of the bacteriophage P2 tail spike protein, gpV


X-RAY DIFFRACTION

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.912α = 90
b = 64.463β = 91.32
c = 67.186γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX225HE2010-04-20MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL44XUSPring-8BL44XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.27990.0697.4148533

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.2746.42140844752399.460.161510.159960.19048RANDOM13.117
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.57-0.770.220.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.501
r_dihedral_angle_4_deg15.864
r_dihedral_angle_3_deg10.67
r_dihedral_angle_1_deg7.783
r_scangle_it5.742
r_scbond_it3.575
r_angle_refined_deg2.539
r_mcangle_it2.203
r_mcbond_it1.349
r_chiral_restr0.199
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.501
r_dihedral_angle_4_deg15.864
r_dihedral_angle_3_deg10.67
r_dihedral_angle_1_deg7.783
r_scangle_it5.742
r_scbond_it3.575
r_angle_refined_deg2.539
r_mcangle_it2.203
r_mcbond_it1.349
r_chiral_restr0.199
r_bond_refined_d0.031
r_gen_planes_refined0.016
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4985
Nucleic Acid Atoms
Solvent Atoms896
Heterogen Atoms6

Software

Software
Software NamePurpose
SHARPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling