3AQJ | pdb_00003aqj

Crystal Structure of a C-terminal domain of the bacteriophage P2 tail spike protein, gpV

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Phage fibre proteins	8095956	3000351	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage fibre proteins	8095956	3000351	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage fibre proteins	8095956	3000351	SCOP2B (2022-06-29)
D [auth P]	SCOP2B Superfamily	Phage fibre proteins	8095956	3000351	SCOP2B (2022-06-29)
E [auth Q]	SCOP2B Superfamily	Phage fibre proteins	8095956	3000351	SCOP2B (2022-06-29)
F [auth R]	SCOP2B Superfamily	Phage fibre proteins	8095956	3000351	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Phage_spike	e3aqjA1	A: a/b three-layered sandwiches	X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	F: Phage_spike	ECOD (v294.1)
B	FeoB_Cyto	e3aqjB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FeoB_Cyto	ECOD (v294.1)
C	FeoB_Cyto	e3aqjC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FeoB_Cyto	ECOD (v294.1)
D [auth P]	FeoB_Cyto	e3aqjP1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FeoB_Cyto	ECOD (v294.1)
E [auth Q]	FeoB_Cyto	e3aqjQ1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FeoB_Cyto	ECOD (v294.1)
F [auth R]	FeoB_Cyto	e3aqjR1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FeoB_Cyto	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D [auth P], E [auth Q], A, B, C, D [auth P], E [auth Q], F [auth R]	PF18715	Phage spike trimer (Phage_spike)	Phage spike trimer	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D [auth P], E [auth Q], A, B, C, D [auth P], E [auth Q], F [auth R]	Baseplate assembly protein V	cation binding ion binding binding metal ion binding small molecule binding	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont genome entry into host cell via pore formation in plasma membrane symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism virion attachment to host cell receptor-mediated virion attachment to host cell symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont genome entry into host cell via pore formation in plasma membrane symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host virion assembly viral tail assembly	virus tail virion component virus tail, baseplate

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D [auth P], E [auth Q], A, B, C, D [auth P], E [auth Q], F [auth R]	IPR006531	Gp5/Type VI secretion system Vgr protein, OB-fold domain	Domain
A, B, C, D [auth P], E [auth Q], A, B, C, D [auth P], E [auth Q], F [auth R]	IPR013046	Phage baseplate assembly protein V/Gp45	Family
A, B, C, D [auth P], E [auth Q], A, B, C, D [auth P], E [auth Q], F [auth R]	IPR037026	Vgr protein, OB-fold domain superfamily	Homologous Superfamily
A, B, C, D [auth P], E [auth Q], A, B, C, D [auth P], E [auth Q], F [auth R]	IPR040629	Phage spike trimer	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.