3AJ1

The structure of AxCeSD octamer (N-terminal HIS-tag) from Acetobacter xylinum


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION6.52930.1M LITHIUM SULFATE, 0.1M N-(2-ACETAMIDE) IMINODIACETIC ACID PH 6.5, 12%(W/V) POLYETHYLENE GLYCOL 4000, 2%(V/V) ISO-PROPANOL, EVAPORATION, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
2.4549.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.7α = 90
b = 77.7β = 90
c = 213.924γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU JUPITER 2102006-04-14MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B10.9790, 0.9793, 0.9000SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.455098.50.0860.08610.97.2513535135348.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.452.5486.30.4230.4231.45

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.519.8744637488399.430.20860.203330.25708RANDOM61.319
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.880.440.88-1.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.197
r_dihedral_angle_4_deg22.404
r_dihedral_angle_3_deg20.098
r_dihedral_angle_1_deg6.586
r_scangle_it3.336
r_scbond_it2.039
r_mcangle_it1.592
r_angle_refined_deg1.404
r_mcbond_it0.843
r_chiral_restr0.096
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.197
r_dihedral_angle_4_deg22.404
r_dihedral_angle_3_deg20.098
r_dihedral_angle_1_deg6.586
r_scangle_it3.336
r_scbond_it2.039
r_mcangle_it1.592
r_angle_refined_deg1.404
r_mcbond_it0.843
r_chiral_restr0.096
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9539
Nucleic Acid Atoms
Solvent Atoms392
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling