☰ Navigation Tabs
Crystal structure of the Borealin-Survivin complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F3H 1F3H chain A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 0.5 ul protein and 0.5 ul well solution (0.1 M Na HEPES, pH 7.5; 0.2 M CaCl2; 28% (w/v) PEG 400), VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.69 54.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.7 α = 90 b = 51.681 β = 98.82 c = 46.289 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 98 0.048 14.9 3.6 10387 10387 -3 51
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 100 0.21 3 3.7 1045
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1F3H chain A 2.4 30 -3 10207 9163 1044 98.55 0.25354 0.25354 0.24826 0.2476 0.29829 0.3 RANDOM 59.453
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 -7.11 -0.21 -2.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.113 r_dihedral_angle_4_deg 21.4 r_dihedral_angle_3_deg 17.39 r_dihedral_angle_1_deg 5.231 r_scangle_it 4.437 r_mcangle_it 3.971 r_mcbond_it 3.184 r_scbond_it 2.99 r_angle_refined_deg 1.149 r_angle_other_deg 0.851
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.113 r_dihedral_angle_4_deg 21.4 r_dihedral_angle_3_deg 17.39 r_dihedral_angle_1_deg 5.231 r_scangle_it 4.437 r_mcangle_it 3.971 r_mcbond_it 3.184 r_scbond_it 2.99 r_angle_refined_deg 1.149 r_angle_other_deg 0.851 r_mcbond_other 0.555 r_symmetry_vdw_refined 0.253 r_nbd_refined 0.201 r_nbd_other 0.184 r_nbtor_refined 0.178 r_symmetry_vdw_other 0.152 r_nbtor_other 0.089 r_xyhbond_nbd_refined 0.08 r_chiral_restr 0.063 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1597 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling PHASER phasing