2RAW

Crystal structure of the Borealin-Survivin complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52920.5 ul protein and 0.5 ul well solution (0.1 M Na HEPES, pH 7.5; 0.2 M CaCl2; 28% (w/v) PEG 400), VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.6954.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.7α = 90
b = 51.681β = 98.82
c = 46.289γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-04-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.11.0ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.430980.04814.93.61038710387-351
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.491000.2133.71045

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1F3H chain A2.430-3102079163104498.550.253540.253540.248260.29829RANDOM59.453
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.79-7.11-0.21-2.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.113
r_dihedral_angle_4_deg21.4
r_dihedral_angle_3_deg17.39
r_dihedral_angle_1_deg5.231
r_scangle_it4.437
r_mcangle_it3.971
r_mcbond_it3.184
r_scbond_it2.99
r_angle_refined_deg1.149
r_angle_other_deg0.851
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.113
r_dihedral_angle_4_deg21.4
r_dihedral_angle_3_deg17.39
r_dihedral_angle_1_deg5.231
r_scangle_it4.437
r_mcangle_it3.971
r_mcbond_it3.184
r_scbond_it2.99
r_angle_refined_deg1.149
r_angle_other_deg0.851
r_mcbond_other0.555
r_symmetry_vdw_refined0.253
r_nbd_refined0.201
r_nbd_other0.184
r_nbtor_refined0.178
r_symmetry_vdw_other0.152
r_nbtor_other0.089
r_xyhbond_nbd_refined0.08
r_chiral_restr0.063
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1597
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing