Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report | Ligand Interaction

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 33.28 kDa 
• Atom Count: 2320 
• Modelled Residue Count: 271 
• Deposited Residue Count: 284 
• Unique protein chains: 1

1F3H

X-RAY CRYSTAL STRUCTURE OF THE HUMAN ANTI-APOPTOTIC PROTEIN SURVIVIN

• PDB DOI: 10.2210/pdb1F3H/pdb

• Classification: APOPTOSIS
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2000-06-03 Released: 2000-12-06 
• Deposition Author(s): Verdecia, M.A., Huang, H., Dutil, E., Hunter, T., Noel, J.P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.58 Å
• R-Value Free: 0.287 
• R-Value Work: 0.228 
• R-Value Observed: 0.228 

Literature

Structure of the human anti-apoptotic protein survivin reveals a dimeric arrangement.

Verdecia, M.A., Huang, H., Dutil, E., Kaiser, D.A., Hunter, T., Noel, J.P.

(2000) Nat Struct Biol 7: 602-608

• PubMed: 10876248 
• DOI: 10.1038/76838
• Primary Citation of Related Structures:  
  1F3H


• PubMed Abstract: 
  

Survivin is a 16.5 kDa protein that is expressed during the G2/M phase of the cell cycle and is hypothesized to inhibit a default apoptotic cascade initiated in mitosis. This inhibitory function is coupled to survivin's localization to the mitotic spindle. To begin to address the structural basis of survivin's function, we report the X-ray crystal structure of a recombinant form of full length survivin to 2.58 A resolution. Survivin consists of two defined domains including an N-terminal Zn2+-binding BIR domain linked to a 65 A amphipathic C-terminal alpha-helix. The crystal structure reveals an extensive dimerization interface along a hydrophobic surface on the BIR domain of each survivin monomer. A basic patch acting as a sulfate/phosphate-binding module, an acidic cluster projecting off the BIR domain, and a solvent-accessible hydrophobic surface residing on the C-terminal amphipathic helix, are suggestive of functional protein-protein interaction surfaces.

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Organizational Affiliation: 

Structural Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SURVIVIN	A, B	142	Homo sapiens	Mutation(s): 1  Gene Names: BIRC5, API4, IAP4
UniProt & NIH Common Fund Data Resources
Find proteins for O15392 (Homo sapiens) Explore O15392  Go to UniProtKB:  O15392
PHAROS:  O15392

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	D [auth A], E [auth A], G [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
ZN	C [auth A], F [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.58 Å
• R-Value Free: 0.287 
• R-Value Work: 0.228 
• R-Value Observed: 0.228 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 114.04	α = 90
b = 71.45	β = 133.37
c = 86.63	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SHARP	phasing
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2000-06-03 
• Released Date: 2000-12-06 
Deposition Author(s): Verdecia, M.A., Huang, H., Dutil, E., Hunter, T., Noel, J.P.

Revision History  

• Version 1.0: 2000-12-06
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2021-11-03
  Changes: Database references, Derived calculations