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Crystal structure of the f1-atpase from the thermoalkaliphilic bacterium bacillus sp. ta2.a1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BMF PDB ENTRY 1BMF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.8 296 1M LiCl, 0.1M Tris-HCl, 20% PEG 6000 , pH 8.8, MICRO-BATCH, temperature 296K
Crystal Properties Matthews coefficient Solvent content 3.29 62.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.21 α = 90 b = 173.02 β = 90 c = 218.05 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARMOSAIC 225 mm CCD Dynamically bendable mirror 2005-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.979540 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.06 50 91.1 0.119 0.119 10.2 3.8 90041 -3 -3 72.595
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.06 3.25 74.9 0.716 0.716 1.8 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BMF 3.06 39.997 -3 -3 90041 83712 2094 94.61 0.2519 0.2439 0.306 0.3043 random 77.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 22.643 -7.208 -15.435
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.059 f_angle_d 0.662 f_bond_d 0.005 f_bond_d_na f_bond_d_prot f_angle_d_na f_angle_d_prot f_angle_deg f_angle_deg_na f_angle_deg_prot
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.059 f_angle_d 0.662 f_bond_d 0.005 f_bond_d_na f_bond_d_prot f_angle_d_na f_angle_d_prot f_angle_deg f_angle_deg_na f_angle_deg_prot f_dihedral_angle_d_na f_dihedral_angle_d_prot f_improper_angle_d f_improper_angle_d_na f_improper_angle_d_prot f_mcbond_it f_mcangle_it f_scbond_it f_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 24330 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction XDS data scaling PHASER phasing