2QE7 | pdb_00002qe7

Crystal structure of the f1-atpase from the thermoalkaliphilic bacterium bacillus sp. ta2.a1


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Gd2qe7g_ Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like ATP synthase (F1-ATPase), gamma subunit automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Dd2qe7d3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Dd2qe7d1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Dd2qe7d2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ed2qe7e3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ed2qe7e1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ed2qe7e2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Fd2qe7f3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Fd2qe7f1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Fd2qe7f2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ad2qe7a3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ad2qe7a1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ad2qe7a2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Bd2qe7b3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Bd2qe7b1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Bd2qe7b2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Cd2qe7c3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Cd2qe7c1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Cd2qe7c2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2 FamilyATP synthase gamma subunit-like 8072562 4000503 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyATP synthase gamma subunit-like 8072563 3000451 SCOP2 (2022-06-29)
DSCOP2 FamilyATP synthase alpha/beta N-terminal domain-like 8056920 4002275 SCOP2 (2022-06-29)
DSCOP2 FamilyATP synthase nucleotide-binding domain-like 8056922 4004011 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056921 3001034 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyRecA-like P-loop NTPases 8056923 3002019 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056924 3000684 SCOP2 (2022-06-29)
ESCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056924 3000684 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056921 3001034 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRecA-like P-loop NTPases 8056923 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRecA-like P-loop NTPases 8056923 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056921 3001034 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056924 3000684 SCOP2B (2022-06-29)
ASCOP2 FamilyATP synthase alpha/beta N-terminal domain-like 8056884 4002275 SCOP2 (2022-06-29)
ASCOP2 FamilyATP synthase nucleotide-binding domain-like 8056886 4004011 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056885 3001034 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRecA-like P-loop NTPases 8056887 3002019 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056888 3000684 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8056887 3002019 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056885 3001034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056888 3000684 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056885 3001034 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8056887 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056888 3000684 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Hfn3e2qe7H1 A: a/b three-layered sandwichesX: Profilin-likeH: sensor domainsT: sensor domainsF: fn3ECOD (v294.1)
GPHPe2qe7G2 A: a/b three-layered sandwichesX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: PHPECOD (v294.1)
DPkinasee2qe7D3 A: a/b three-layered sandwichesX: Profilin-likeH: sensor domainsT: sensor domainsF: PkinaseECOD (v294.1)
DV-sete2qe7D4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
EPK_Tyr_Ser-Thre2qe7E1 A: a/b three-layered sandwichesX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.1)
EV-sete2qe7E4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
FPK_Tyr_Ser-Thre2qe7F1 A: a/b three-layered sandwichesX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.1)
FV-sete2qe7F4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
APkinasee2qe7A1 A: a/b three-layered sandwichesX: Profilin-likeH: sensor domainsT: sensor domainsF: PkinaseECOD (v294.1)
BPK_Tyr_Ser-Thre2qe7B1 A: a/b three-layered sandwichesX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.1)
CPK_Tyr_Ser-Thre2qe7C1 A: a/b three-layered sandwichesX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H2.60.15.10 Mainly Beta Sandwich ATP Synthase domain 1CATH (4.3.0)
H1.20.5.440 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces ATP synthase delta/epsilon subunit, C-terminal domainCATH (4.3.0)
G1.10.287.80 Mainly Alpha Orthogonal Bundle Helix Hairpins ATP synthase, gamma subunit, helix hairpin domainCATH (4.3.0)
G3.40.1380.10 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
D2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)
D3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
D1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)
E2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)
E3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
E1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)
F2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)
F3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
F1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)
A2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (4.3.0)
B2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
B3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
B1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (4.3.0)
C2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
C3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
C1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP synthase subunit epsilon -
ATP synthase subunit gamma
D, E, F
ATP synthase subunit beta -
A, B, C
ATP synthase subunit alpha -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
IPR020547ATP synthase epsilon subunit, C-terminal domainDomain
IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
IPR000131ATP synthase, F1 complex, gamma subunitFamily
IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
D, E, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
D, E, F
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
D, E, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR050053ATPase alpha/beta chainsFamily
D, E, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F
IPR055190ATP synthase A/B type, C-terminal domainDomain
D, E, F
IPR003593AAA+ ATPase domainDomain
D, E, F
IPR005722ATP synthase, F1 complex, beta subunitFamily
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, B, C
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
A, B, C
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, B, C
IPR000793ATP synthase, alpha subunit, C-terminalDomain
A, B, C
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A, B, C
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A, B, C
IPR005294ATP synthase, F1 complex, alpha subunitFamily
A, B, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily