2OW3

Glycogen synthase kinase-3 beta in complex with bis-(indole)maleimide pyridinophane inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
19PEG2000, BICINE pH9.0
Crystal Properties
Matthews coefficientSolvent content
3.4464.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.472α = 90
b = 117.329β = 103.22
c = 69.461γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mmDynamically blendable mirror2005-05-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.867.695.10.1150.1155.43.7254272542782.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.83.0279.80.08540.08541.33.44465

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpreviously derived model (originally from 1H8F)2.867.572542725427103294.760.247940.247940.245950.29483RANDOM61.55
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.31-0.946.45-4.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.17
r_dihedral_angle_3_deg16.102
r_dihedral_angle_4_deg12.358
r_dihedral_angle_1_deg5.404
r_scangle_it3.245
r_scbond_it2.145
r_mcangle_it1.67
r_mcbond_it1.32
r_angle_refined_deg1.033
r_angle_other_deg0.742
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.17
r_dihedral_angle_3_deg16.102
r_dihedral_angle_4_deg12.358
r_dihedral_angle_1_deg5.404
r_scangle_it3.245
r_scbond_it2.145
r_mcangle_it1.67
r_mcbond_it1.32
r_angle_refined_deg1.033
r_angle_other_deg0.742
r_nbd_refined0.188
r_mcbond_other0.184
r_nbtor_refined0.173
r_symmetry_vdw_other0.168
r_nbd_other0.166
r_xyhbond_nbd_refined0.118
r_nbtor_other0.081
r_symmetry_vdw_refined0.075
r_symmetry_hbond_refined0.061
r_chiral_restr0.06
r_bond_refined_d0.007
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5584
Nucleic Acid Atoms
Solvent Atoms15
Heterogen Atoms82

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
MOSFLMdata reduction
SCALAdata scaling
CCP4phasing