3D NMR structure of the cytoplasmic rhodanese domain of the full-length inner membrane protein YgaP from Escherichia coli
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP | 95% H2O/5% D2O | |||||
| 2 | 3D HNCA | 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP | 95% H2O/5% D2O | |||||
| 3 | 3D HN(CO)CA | 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP | 95% H2O/5% D2O | |||||
| 4 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N] YgaP | 95% H2O/5% D2O | 0 | 7.0 | ambient | 303 | |
| 5 | 3D 1H-13C NOESY | 0.5 mM [U-100% 13C; U-100% 15N] YgaP | 95% H2O/5% D2O | 0 | 7.0 | ambient | 303 | |
| 6 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP | 95% H2O/5% D2O | |||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 2 | chemical shift assignment | XEASY | Bartels et al. | |
| 3 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
