2MOL
3D NMR structure of the cytoplasmic rhodanese domain of the full-length inner membrane protein YgaP from Escherichia coli
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP | 95% H2O/5% D2O | |||||
2 | 3D HNCA | 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP | 95% H2O/5% D2O | |||||
3 | 3D HN(CO)CA | 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP | 95% H2O/5% D2O | |||||
4 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N] YgaP | 95% H2O/5% D2O | 0 | 7.0 | ambient | 303 | |
5 | 3D 1H-13C NOESY | 0.5 mM [U-100% 13C; U-100% 15N] YgaP | 95% H2O/5% D2O | 0 | 7.0 | ambient | 303 | |
6 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP | 95% H2O/5% D2O |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | chemical shift assignment | XEASY | Bartels et al. | |
3 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |