2LO6

Structure of Nrd1 CID bound to phosphorylated RNAP II CTD


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
22D 1H-13C HSQC2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
33D CBCA(CO)NH2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
43D HNCA2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
53D HNCACB2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
63D HN(CO)CA2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
73D HCCH-TOCSY2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
83D 1H-15N NOESY2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
93D 1H-13C NOESY aliphatic2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
103D filtered-edited NOESY2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
112D filtered-filtered NOESY2 mM [U-100% 13C; U-100% 15N] Nrd1 polypeptide, 2.3 mM phosphopeptide90% H2O/10% D2O1008ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
2BrukerAvance900
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, simulated annealingTOPSPIN
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number40
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTOPSPINBruker Biospin
2chemical shift assignmentSPARKYGoddard
3structure solutionCYANAGuntert, Mumenthaler and Wuthrich
4refinementAMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm
5geometry optimizationCINGVuister, Doreleijers, da Silva
6refinementCYANAGuntert, Mumenthaler and Wuthrich