2JW6

Solution structure of the DEAF1 MYND domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-13C NOESY0,4 mM [U-100% 13C; U-100% 15N] mynd, 4 mM DTT, 20 mM sodium phosphate, 100 mM sodium chloride, 90% H2O, 10% D2O90% H2O/10% D2O20mM phosphate, 100mM NaCl6.8ambient atm295
23D HNCA0,4 mM [U-100% 13C; U-100% 15N] mynd, 4 mM DTT, 20 mM sodium phosphate, 100 mM sodium chloride, 90% H2O, 10% D2O90% H2O/10% D2O20mM phosphate, 100mM NaCl6.8ambient atm295
33D 1H-15N NOESY0,4 mM [U-100% 13C; U-100% 15N] mynd, 4 mM DTT, 20 mM sodium phosphate, 100 mM sodium chloride, 90% H2O, 10% D2O90% H2O/10% D2O20mM phosphate, 100mM NaCl6.8ambient atm295
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX900
2BrukerDRX800
3BrukerDRX600
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamicsmolecular dynamics The NMR ensemble has been refined in a shell of water molecules. refinement details can be found in the jrnl citation above and linge et al. structures were calculated with aria 1.2 in combination with cns.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2chemical shift assignmentNMRViewJohnson, One Moon Scientific
3data analysisNMRViewJohnson, One Moon Scientific
4structure solutionARIALinge, O'Donoghue and Nilges
5refinementARIALinge, O'Donoghue and Nilges