2IG0

Structure of 53BP1/methylated histone peptide complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72932% PEG 400, 0.1M HEPES/NA, 2M AMMONIUM SULFATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2144.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.372α = 90
b = 78.535β = 121.2
c = 36.445γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42005-10-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X12BNSLSX12B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.724.1182.961177611776
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.74430.34

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.724.111177562982.960.17980.17590.25138RANDOM33.516
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.150.03-0.180.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.034
r_dihedral_angle_4_deg21.563
r_dihedral_angle_3_deg18.098
r_dihedral_angle_1_deg7.126
r_scangle_it5.103
r_scbond_it3.714
r_mcangle_it2.447
r_angle_refined_deg2.223
r_mcbond_it1.601
r_symmetry_hbond_refined0.411
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.034
r_dihedral_angle_4_deg21.563
r_dihedral_angle_3_deg18.098
r_dihedral_angle_1_deg7.126
r_scangle_it5.103
r_scbond_it3.714
r_mcangle_it2.447
r_angle_refined_deg2.223
r_mcbond_it1.601
r_symmetry_hbond_refined0.411
r_nbtor_refined0.316
r_xyhbond_nbd_refined0.315
r_nbd_refined0.301
r_symmetry_vdw_refined0.227
r_chiral_restr0.189
r_bond_refined_d0.024
r_gen_planes_refined0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1119
Nucleic Acid Atoms
Solvent Atoms191
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing