2HEK

Crystal structure of O67745, a hypothetical protein from Aquifex aeolicus at 2.0 A resolution.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.229310 mg/ml protein was mixed with 1:1 ratio with reservoir consisted of: 200 mM NaCl, 100 mM Phosphate-Citrate buffer, 10% PEG 3000, 100 mM NaBr, 5% Glycerol, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.1861.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.687α = 90
b = 144.413β = 90
c = 144.677γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210Divergence: 3.0(h)x0.35(v) mrad Spot size: 0.140(h)x0.150(v) mm2004-06-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.11.0ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9974395.70.04421.44.780115763001144
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9972.0795.70.520.5182.53.88061

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.997127557471767380799.350.176860.176860.174550.2201RANDOM46.142
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.27-1.03-1.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.445
r_dihedral_angle_4_deg18.001
r_dihedral_angle_3_deg14.866
r_sphericity_free6.215
r_rigid_bond_restr5.698
r_scangle_it5.617
r_dihedral_angle_1_deg5.416
r_mcangle_it5.133
r_scbond_it4.995
r_sphericity_bonded4.603
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.445
r_dihedral_angle_4_deg18.001
r_dihedral_angle_3_deg14.866
r_sphericity_free6.215
r_rigid_bond_restr5.698
r_scangle_it5.617
r_dihedral_angle_1_deg5.416
r_mcangle_it5.133
r_scbond_it4.995
r_sphericity_bonded4.603
r_mcbond_it4.045
r_angle_refined_deg1.452
r_nbtor_refined0.31
r_symmetry_vdw_refined0.219
r_nbd_refined0.215
r_symmetry_hbond_refined0.209
r_xyhbond_nbd_refined0.154
r_chiral_restr0.105
r_metal_ion_refined0.086
r_bond_refined_d0.015
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6218
Nucleic Acid Atoms
Solvent Atoms355
Heterogen Atoms132

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXphasing