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The crystal structure of an outer membrane protein from the Bartonella henselae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 287 2M (NH4)2SO4, 0.1M CAPS pH10.5, 0.2M Li2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 1.99 38.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.527 α = 90 b = 51.931 β = 90 c = 62.368 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 86.54 0.066 21 4.6 10365 8970 2 2 35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 35.6 0.505 1.3 3.8 986
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 39.9 10365 8970 447 86.54 0.2009 0.19927 0.1971 0.2342 0.2289 RANDOM 35.406
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 1.2 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.705 r_dihedral_angle_4_deg 18.855 r_dihedral_angle_3_deg 13.286 r_dihedral_angle_1_deg 5.766 r_scangle_it 3.319 r_scbond_it 2.023 r_angle_refined_deg 1.325 r_mcangle_it 1.146 r_mcbond_it 0.689 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.705 r_dihedral_angle_4_deg 18.855 r_dihedral_angle_3_deg 13.286 r_dihedral_angle_1_deg 5.766 r_scangle_it 3.319 r_scbond_it 2.023 r_angle_refined_deg 1.325 r_mcangle_it 1.146 r_mcbond_it 0.689 r_nbtor_refined 0.307 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.152 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 905 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling