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Ternary complex of hPoli with DNA and dCTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ALZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 16% PEG 5K MME, 0.4M Ammonium Sulfate, 0.1M MES buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.88 57.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.148 α = 90 b = 98.148 β = 90 c = 203.112 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 100 0.073 49.9 21 26566
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 0.282 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ALZ 2.3 42.64 24063 2064 98.6 0.23209 0.22815 0.27818 0.2989 RANDOM 32.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.19 0.39 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.127 r_scangle_it 6.438 r_scbond_it 4.38 r_angle_refined_deg 3.477 r_mcangle_it 3.209 r_mcbond_it 1.853 r_angle_other_deg 1.447 r_symmetry_vdw_refined 0.887 r_symmetry_hbond_refined 0.776 r_symmetry_vdw_other 0.412
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.127 r_scangle_it 6.438 r_scbond_it 4.38 r_angle_refined_deg 3.477 r_mcangle_it 3.209 r_mcbond_it 1.853 r_angle_other_deg 1.447 r_symmetry_vdw_refined 0.887 r_symmetry_hbond_refined 0.776 r_symmetry_vdw_other 0.412 r_nbd_refined 0.297 r_nbd_other 0.272 r_xyhbond_nbd_refined 0.217 r_chiral_restr 0.21 r_nbtor_other 0.114 r_bond_refined_d 0.046 r_gen_planes_refined 0.019 r_gen_planes_other 0.016 r_bond_other_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2871 Nucleic Acid Atoms 323 Solvent Atoms 122 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing