2DPI

Ternary complex of hPoli with DNA and dCTP


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.516% PEG 5K MME, 0.4M Ammonium Sulfate, 0.1M MES buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.8857.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.148α = 90
b = 98.148β = 90
c = 203.112γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-10-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3501000.07349.92126566
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.30.28210.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2ALZ2.342.6424063206498.60.232090.228150.27818RANDOM32.274
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.390.190.39-0.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg9.127
r_scangle_it6.438
r_scbond_it4.38
r_angle_refined_deg3.477
r_mcangle_it3.209
r_mcbond_it1.853
r_angle_other_deg1.447
r_symmetry_vdw_refined0.887
r_symmetry_hbond_refined0.776
r_symmetry_vdw_other0.412
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg9.127
r_scangle_it6.438
r_scbond_it4.38
r_angle_refined_deg3.477
r_mcangle_it3.209
r_mcbond_it1.853
r_angle_other_deg1.447
r_symmetry_vdw_refined0.887
r_symmetry_hbond_refined0.776
r_symmetry_vdw_other0.412
r_nbd_refined0.297
r_nbd_other0.272
r_xyhbond_nbd_refined0.217
r_chiral_restr0.21
r_nbtor_other0.114
r_bond_refined_d0.046
r_gen_planes_refined0.019
r_gen_planes_other0.016
r_bond_other_d0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2871
Nucleic Acid Atoms323
Solvent Atoms122
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing