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R381K mutant of flavocytochrome c3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QJD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 0.1M TrisHCl, 80mM NaCl, 10mM Na fumarate, 15% PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.61 52.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.228 α = 90 b = 91.362 β = 91.26 c = 78.193 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 1.488 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 35 99.2 0.115 12.6 35764 35478 15.504
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.14 98.3 4.7 1765
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1QJD 2.12 35 33702 1763 98.53 0.14678 0.14412 0.145 0.19671 0.1968 RANDOM 15.472
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.03 0.74 -0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.906 r_dihedral_angle_4_deg 17.115 r_dihedral_angle_3_deg 14.075 r_dihedral_angle_1_deg 6.579 r_scangle_it 3.524 r_scbond_it 2.325 r_angle_refined_deg 1.514 r_mcangle_it 1.294 r_mcbond_it 0.716 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.906 r_dihedral_angle_4_deg 17.115 r_dihedral_angle_3_deg 14.075 r_dihedral_angle_1_deg 6.579 r_scangle_it 3.524 r_scbond_it 2.325 r_angle_refined_deg 1.514 r_mcangle_it 1.294 r_mcbond_it 0.716 r_nbtor_refined 0.294 r_symmetry_vdw_refined 0.283 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.167 r_chiral_restr 0.116 r_metal_ion_refined 0.061 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4185 Nucleic Acid Atoms Solvent Atoms 773 Heterogen Atoms 234
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing