X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION72900.1 M HEPES pH 7.0, 0.3 M Ammonium Sulfate, 12 % PEG 4K, VAPOR DIFFUSION, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
2.550

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.138α = 90
b = 142.61β = 90
c = 95.684γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray170CCDMARRESEARCHSi-2202005-03-24MSINGLE WAVELENGTH
21x-ray170CCDMARRESEARCHSi-2202005-06-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM0.976250APS22-BM
2SYNCHROTRONAPS BEAMLINE 22-ID0.979260APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.34099.10.1175.17.42260922417
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.498.70.3412.37.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSAD (crystal 2) followed by molecular replacement (crystal 1)THROUGHOUT2.32022116420910113798.80.2140.2140.2120.264RANDOM24.35
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.026
r_dihedral_angle_3_deg18.007
r_dihedral_angle_4_deg16.281
r_dihedral_angle_1_deg5.473
r_scangle_it1.827
r_angle_refined_deg1.2
r_scbond_it1.113
r_mcangle_it1.037
r_mcbond_it0.601
r_nbtor_refined0.294
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.026
r_dihedral_angle_3_deg18.007
r_dihedral_angle_4_deg16.281
r_dihedral_angle_1_deg5.473
r_scangle_it1.827
r_angle_refined_deg1.2
r_scbond_it1.113
r_mcangle_it1.037
r_mcbond_it0.601
r_nbtor_refined0.294
r_nbd_refined0.181
r_symmetry_hbond_refined0.168
r_symmetry_vdw_refined0.151
r_xyhbond_nbd_refined0.134
r_chiral_restr0.08
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3697
Nucleic Acid Atoms
Solvent Atoms180
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
CNSphasing
AMoREphasing
CNSrefinement