2B0F

NMR Structure of the Human Rhinovirus 3C Protease (serotype 14) with covalently bound Ace-LEALFQ-ethylpropionate inhibitor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY0.75mM HRV14-3C with covalent inhibitor 20mM KH2PO4 15mM DTT 0.5mM EDTA 0.1mM DSS pH 6.5; 90% H2O, 10% D2O90% H2O/10% D2O20mM KH2PO46.5ambient25
23D_15N-separated_NOESY0.75mM HRV14-3C with covalent inhibitor 20mM KH2PO4 15mM DTT 0.5mM EDTA 0.1mM DSS pH 6.5; 90% H2O, 10% D2O90% H2O/10% D2O20mM KH2PO46.5ambient25
33D_13C-separated_NOESY0.75mM HRV14-3C with covalent inhibitor 20mM KH2PO4 15mM DTT 0.5mM EDTA 0.1mM DSS pD 6.5; 99.96% D2O99.96% D2O20mM KH2PO46.5ambient25
42D NOESY0.75mM HRV14-3C with covalent inhibitor 20mM KH2PO4 15mM DTT 0.5mM EDTA 0.1mM DSS pD 6.5; 99.96% D2O99.96% D2O20mM KH2PO46.5ambient25
5HNHA0.75mM HRV14-3C with covalent inhibitor 20mM KH2PO4 15mM DTT 0.5mM EDTA 0.1mM DSS pH 6.5; 90% H2O, 10% D2O90% H2O/10% D2O20mM KH2PO46.5ambient25
615N HSQC0.75mM HRV14-3C with covalent inhibitor 20mM KH2PO4 15mM DTT 0.5mM EDTA 0.1mM DSS pD 6.5; 99.96% D2O99.96% D2O20mM KH2PO46.5ambient25
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
NMR Refinement
MethodDetailsSoftware
simulated annealing molecular dynamics torsion angle dynamics RECOORD water refinementX-PLOR
NMR Ensemble Information
Conformer Selection Criteriaback calculated data agree with experimental NOESY spectrum,structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsH-bond donors determined from 15N HSQC exchanged into D2O. 3J HNHA couplings determined from HNHA. 13C-seperated NOESY collected in 99.96% D2O without wet water suppression to achieve cross strand beta-sheet HA-HA NOEs.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionX-PLORXPLOR-NIH v.2.10Brunger
2refinementCNS1.1Brunger