2ZUH

Crystal Structure of Camphor-soaked Ferric Cytochrome P450cam Mutant (D297A)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.429812-15% PEG 4000, 50mM Tris-HCl, 250mM KCl, 0.1mM d-Camphor, 10mM dithioerythritol(DTE), pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.7354.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.749α = 90
b = 63.749β = 90
c = 250.943γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102008-03-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.0Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5533.5499.10.05812.17.1763677568016.799
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.551.6199.90.3665.67433

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2ZAX1.5533.5471854379699.290.16170.160450.18471RANDOM19.373
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.095
r_dihedral_angle_3_deg13.021
r_dihedral_angle_4_deg11.075
r_sphericity_bonded9.211
r_dihedral_angle_1_deg5.858
r_scangle_it2.423
r_scbond_it1.602
r_angle_refined_deg1.488
r_mcangle_it1.153
r_mcbond_it0.667
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.095
r_dihedral_angle_3_deg13.021
r_dihedral_angle_4_deg11.075
r_sphericity_bonded9.211
r_dihedral_angle_1_deg5.858
r_scangle_it2.423
r_scbond_it1.602
r_angle_refined_deg1.488
r_mcangle_it1.153
r_mcbond_it0.667
r_nbtor_refined0.312
r_nbd_refined0.223
r_symmetry_vdw_refined0.195
r_metal_ion_refined0.126
r_symmetry_hbond_refined0.126
r_xyhbond_nbd_refined0.121
r_chiral_restr0.094
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3458
Nucleic Acid Atoms
Solvent Atoms863
Heterogen Atoms64

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing