X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2ZMCPDB ENTRY 2ZMC

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5298PEG300, HEPES, pH6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3447.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.6α = 90
b = 105.17β = 90
c = 111.97γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray94IMAGE PLATERIGAKU RAXIS IV++2007-09-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8859.7699.80.1070.07211.73.19729184.702
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.883.041000.7980.5351.53.11397

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2ZMC2.8840.499729926146899.610.223140.221220.2605RANDOM50.441
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.780.733.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.778
r_dihedral_angle_4_deg23.639
r_dihedral_angle_3_deg14.003
r_dihedral_angle_1_deg5.537
r_angle_refined_deg1.023
r_angle_other_deg0.786
r_scangle_it0.537
r_mcangle_it0.373
r_scbond_it0.354
r_mcbond_it0.332
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.778
r_dihedral_angle_4_deg23.639
r_dihedral_angle_3_deg14.003
r_dihedral_angle_1_deg5.537
r_angle_refined_deg1.023
r_angle_other_deg0.786
r_scangle_it0.537
r_mcangle_it0.373
r_scbond_it0.354
r_mcbond_it0.332
r_symmetry_vdw_refined0.2
r_nbd_refined0.194
r_symmetry_vdw_other0.183
r_nbtor_refined0.174
r_nbd_other0.165
r_symmetry_hbond_refined0.131
r_xyhbond_nbd_refined0.122
r_nbtor_other0.082
r_chiral_restr0.062
r_mcbond_other0.03
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2111
Nucleic Acid Atoms
Solvent Atoms26
Heterogen Atoms33

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata collection
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing